One way to do it is just to slug through it:
An isomorphism $\mathbb{F}_3(\alpha)\to\mathbb{F}_3(\beta)$ is completely determined by the image of $\alpha$; and, as you note in comments, the image of $\alpha$ must be of the form $a\beta^2 + b\beta + c$, with $a,b,c\in\mathbb{F}_3$. Moreover, the image of $\alpha$ must satisfy $\alpha^3 = \alpha - 1$; that is, you want to find $a,b,c$ such that
$$(a\beta^2 + b\beta + c)^3 = a\beta^2 + b\beta + c-1.$$
So you can just expand the left hand side, using $\beta^3 = \beta^2-1$, and figure out the coefficients. We have:
$$\begin{align*}
\beta^3 &= \beta^2 - 1\\
\beta^4 &= \beta^3-\beta\\
&= \beta^2 - \beta - 1\\
\beta^6 &= (\beta^3)^2
= \beta^4 - 2\beta^2 + 1\\
&= \beta^2 - \beta - 1 -2\beta^2 + 1\\
&= -\beta^2 - \beta.
\end{align*}$$
And so, since we are in characteristic $3$,
$$\begin{align*}
(a\beta^2 + b\beta + c)^3 &= a^3\beta^6 + b^3\beta^3 + c^3\\
&= a^3(-\beta^2-\beta) + b^3(\beta^2-1) + c^3\\
&= (b^3-a^3)\beta^2 + (-a^3)\beta + c^3-b^3\\
&= a\beta^2 + b\beta + c - 1.
\end{align*}$$
So we need to solve the equations
$$\begin{align*}
b^3-a^3 &= a\\
-a^3 &= b\\
c^3 -b^3&= c-1.
\end{align*}$$
Since $a,b,c\in\mathbb{F}_3$, where $x^3=x$ for all $x$, we get
$$\begin{align*}
b-a &= a\\
-a&=b\\
c-b&= c-1
\end{align*}$$
The first two equations both give $b=-a$; the last equation gives $b=1$. So $a=-1$, $b=1$, and $c$ is free (this gives the three roots of the polynomial). That is, $f(\alpha)$ can be any of $-\beta^2+\beta$, $-\beta^2+\beta+1$, $-\beta^2+\beta-1$. You can verify they all work.