You cannot derive $\lnot\forall x F(x) \rightarrow \exists x\lnot F(x)$ in an intuitionistic system without RAA. This is because there is a Soundness Theorem for intuitionistic logic with respect to Kripke Semantics (https://en.wikipedia.org/wiki/Kripke_semantics#Semantics_of_intuitionistic_logic; I spell them out a bit below): if we could derive that implication using the rules (without RAA), then the formula would be valid in all Kripke Models. However, we can construct a counter-example in which $\lnot\forall x F(x) \rightarrow \exists x\lnot F(x)$ does not hold, so it cannot be derived.
Consider the following Kripke Structure $\mathcal{K} = (K, \leq, D, \Vdash)$:

Since $0\leq1$, $1\not\Vdash F(b)$ and $b\in D(1)$, we have $0\not\Vdash\forall x F(x)$, and also $1\not\Vdash\forall x F(x)$, so $0\Vdash \lnot\forall x F(x)$. But at 0, there is no $d\in D(0)$ satisfying $\lnot F(d)$, so $0\not\Vdash\exists x \lnot F(x)$. Hence, $0\not\Vdash\lnot\forall x F(x) \rightarrow \exists x\lnot F(x)$.
In case you're unfamiliar with Kripke Structures. $(K, \leq)$ is a partially ordered set where you can consider the elements of $K$ to be "states of knowledge": at each stage $k\in K$ we "know" some theorems but perhaps not others, which may be proved or refuted at a later stage $k' \geq k$. Each state has a domain of objects, $D(k)$, and $\Vdash$ tells us which sentences hold at each node.
Two observations:
- Objects do not "disappear" once constructed: $k \leq k' \implies D(k) \subset D(k')$.
- Proved theorems remain proved: $k \Vdash\varphi \implies k' \Vdash\varphi$ for all $k' \geq k$.
(You can easily see that the example above satisfies these conditions.)
We can now stipulate the conditions under which $k \Vdash\varphi$:
- $k\Vdash F(d) \iff$ $F(d)$ holds at $k$ and $d\in D(k)$;
- $k\Vdash \lnot\varphi \iff$ for all $k'\geq k$, $k'\not\Vdash\varphi$;
- $k\Vdash \varphi\land\psi \iff k\Vdash\varphi \text{ and } k\Vdash\psi$;
- $k\Vdash \varphi\lor\psi \iff k\Vdash\varphi \text{ or } k\Vdash\psi$;
- $k \Vdash \varphi\rightarrow\psi \iff $ for all $k' \geq k$, $k'\Vdash\varphi$ implies $k'\Vdash\psi$;
- $k\Vdash\forall x F(x) \iff $ for all $k' \geq k$ and all $d\in D(k')$, $k'\Vdash F(d)$;
- $k\Vdash\exists x F(x) \iff $ there is a $d\in D(k)$ such that $k\Vdash F(d)$;
We say that a formula $\varphi$ is Kripke valid if, for all Kripke Structures $\mathcal{K} = (K, D, \Vdash)$ and all $k\in K$, $k\Vdash\varphi$, and we write "$\Vdash\varphi$". Writing "$\vdash_i\varphi$" for "$\varphi$ is intuitionistically provable", we have
Soundness Theorem If $\vdash_i\varphi$, then $\Vdash\varphi$.
Hence, since we showed that $\not\Vdash\lnot\forall x F(x) \rightarrow \exists x\lnot F(x)$ (by providing a Kripke Structure as a counter-example), it follows from the Soundness Theorem that $\not\vdash_i\lnot\forall x F(x) \rightarrow \exists x \lnot F(x)$.