Class Blosum62

  extended by edu.rit.compbio.seq.Blosum62

public class Blosum62
extends Object

Class Blosum62 provides the BLOSUM-62 substitution matrix for protein sequence alignment. The expression Blosum62.matrix[x][y] is the score when amino acid x is aligned with amino acid y, where x and y are amino acids in the range 0..27 from a ProteinSequence.

The BLOSUM-62 substitution matrix is taken from

Field Summary
static int[][] matrix
          The BLOSUM-62 protein substitution matrix.
Method Summary
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail


public static final int[][] matrix
The BLOSUM-62 protein substitution matrix.

Copyright © 2005-2012 by Alan Kaminsky. All rights reserved. Send comments to ark­@­