4002 563/763 01 Bioinformatics Computing II

This course was offered for the first time in Spring 2003. Now in its third incarnation, it is the second computing for bioinformatics courses in the undergraduate bioinformatics program in the College of Science at RIT. We will continue to study techniques for quickly and effectively commandeering computing resources to the solution of problems raised in the realm of biology. This requires development of sophisticated design, analysis, verification, and programming skills.

Instructors

Rhys Price Jones and Anne Haake

Contact

Offices: 70-3559 and 70-2325 (Golisano)

Phone: x5-5866 and x5-5365

Email Rhys: rpjavp@rit.edu

Email Anne: arh@it.rit.edu

Description

Everything you ever wanted to know about Bioinformatics Computing

Course Page

http://www.cs.rit.edu/~rpj/courses/bic2/Syllabus.html (this page)

Syllabus

http://www.cs.rit.edu/~rpj/courses/bic2/563_763Syllabus_v2.doc

Prerequisites

BIC I

Texts:

 An Introduction to Bioinformatics Algorithms, Jones and Pevzner,

Introduction to Bioinformatics, Lesk,

Lab 1

Studio 1

Lab 2

Lab 3

Lab 4

Lab 5

Lecture 2

Lecture 2(.pps)

Tex Talk

Prokaryotic gene finding lecture

Eukaryotic gene finding lecture

Gene Finding with Markov Models and HMMs

Gene Expression Analysis by SAGE and MPSS

Networks and Systems

Mapping of Simple and Complex Diseases

Lee's presentation

Madhu's presentation

Brian's presentation

Shruti's presentation

Julia's presentation

Andrew's presentation

Mohamed's presentation

Priya's presentation

Renikko's presentation

Jennifer's presentation

A Grand Powerpoint of all the Project presentations

Ex1.java is available from ~rpj/bic2. Studio 2 is build from Lab2 and Lecture 2. It does not have a separate link.