A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

T

tag - Variable in class edu.rit.mp.Status

The tag from the message that was received.

tag - Variable in class edu.rit.pj.CommStatus

The tag from the message that was received.

tagOffset() - Method in class edu.rit.pj.WorkerIntegerForLoop

Returns the tag offset for this worker for loop.

tagOffset() - Method in class edu.rit.pj.WorkerIntegerStrideForLoop

Returns the tag offset for this worker for loop.

tagOffset() - Method in class edu.rit.pj.WorkerIteration

Returns the tag offset for this worker for loop.

tagOffset() - Method in class edu.rit.pj.WorkerLongForLoop

Returns the tag offset for this worker for loop.

tagOffset() - Method in class edu.rit.pj.WorkerLongStrideForLoop

Returns the tag offset for this worker for loop.

team() - Method in class edu.rit.pj.ParallelConstruct

Returns the parallel team that is executing this parallel construct.

team() - Method in class edu.rit.pj.WorkerConstruct

Returns the worker team that is executing this worker construct.

terminateJobFinished(int) - Method in class edu.rit.pj.cluster.NonPjJobFrontend

Terminate this Non-PJ Job Frontend immediately, sending a "job finished" message to the Job Scheduler.

Test01 - Class in edu.rit.compbio.phyl.test

Class Test01 is a unit test program for class DnaSequenceList.

Test01 - Class in edu.rit.draw.item.test

Class Test01 is a unit test program for class Drawing.

Test01 - Class in edu.rit.image.test

Class Test01 is a unit test program for class PJGColorImage.

Test01 - Class in edu.rit.mp.test

Class Test01 is a unit test main program that creates and accepts channel connections in the Message Protocol (MP).

Test01 - Class in edu.rit.mri.test

Class Test01 is a main program that does a spin relaxometry analysis on a spin signal data set.

Test01 - Class in edu.rit.pj.cluster.test

Class Test01 is a unit test main program for class JobBackend.

Test01 - Class in edu.rit.pj.job.test

Class Test01 is a JobGenerator for unit testing.

Test01(int) - Constructor for class edu.rit.pj.job.test.Test01

Construct a new test job generator.

Test01 - Class in edu.rit.pj.test

Class Test01 is a unit test main program for classes ParallelTeam and ParallelRegion.

Test02 - Class in edu.rit.compbio.phyl.test

Class Test02 is a unit test program for class DnaSequenceList.

Test02 - Class in edu.rit.draw.item.test

Class Test02 is a unit test program for class Drawing.

Test02 - Class in edu.rit.image.test

Class Test02 is a unit test program for class PJGGrayImage.

Test02 - Class in edu.rit.mp.test

Class Test02 is a main program that sends and receives MP messages using the loopback channel.

Test02 - Class in edu.rit.pj.cluster.test

Class Test02 is a unit test main program for class Comm.

Test02 - Class in edu.rit.pj.test

Class Test02 is a unit test main program for classes ParallelTeam and ParallelRegion.

Test03 - Class in edu.rit.compbio.phyl.test

Class Test03 is a unit test program for class DnaSequenceTree.

Test03 - Class in edu.rit.image.test

Class Test03 is a unit test program for class PJGGrayImage.

Test03 - Class in edu.rit.mri.test

Class Test03 is a main program that does a spin relaxometry analysis on a spin signal data set.

Test03 - Class in edu.rit.pj.cluster.test

Class Test03 is a unit test main program for class StreamFile.

Test03 - Class in edu.rit.pj.test

Class Test03 is a unit test main program for classes ParallelTeam, ParallelRegion, and IntegerForLoop.

Test04 - Class in edu.rit.compbio.phyl.test

Class Test04 is a unit test program for classes DnaSequenceList, DnaSequenceTree, FitchParsimony, and Upgma.

Test04 - Class in edu.rit.image.test

Class Test04 is a unit test program for class PJGHueImage.

Test04 - Class in edu.rit.pj.cluster.test

Class Test04 is a unit test main program for class Comm.

Test04 - Class in edu.rit.pj.test

Class Test04 is a unit test main program for classes ParallelTeam and ParallelRegion.

Test05 - Class in edu.rit.compbio.phyl.test

Class Test05 is a unit test program for class DnaSequenceList.

Test05 - Class in edu.rit.mri.test

Class Test05 is a unit test main program for class edu.rit.mri.SignalDataSetReader.

Test05 - Class in edu.rit.pj.cluster.test

Class Test05 is a unit test main program for the reportComment() method in class JobBackend.

Test05 - Class in edu.rit.pj.test

Class Test05 is a unit test main program for classes ParallelTeam, ParallelRegion, and IntegerForLoop.

Test06 - Class in edu.rit.mri.test

Class Test06 is a unit test main program for class edu.rit.mri.PixelAnalysis.

Test06 - Class in edu.rit.pj.test

Class Test06 is a unit test main program for classes ParallelTeam, ParallelRegion, and ParallelSection.

Test07 - Class in edu.rit.pj.test

Class Test07 is a unit test main program for classes ParallelTeam, ParallelRegion, and ParallelSection.

Test08 - Class in edu.rit.pj.test

Class Test08 is a unit test main program for classes ParallelTeam, ParallelRegion, and IntegerForLoop.

Test09 - Class in edu.rit.pj.test

Class Test09 is a unit test main program for classes ParallelTeam, ParallelRegion, and LongForLoop.

Test12 - Class in edu.rit.pj.test

Class Test12 is a unit test main program for the SMP barrier functionality in package edu.rit.pj.

Test13 - Class in edu.rit.pj.test

Class Test13 is a unit test main program for the SMP barrier functionality in package edu.rit.pj.

Test14 - Class in edu.rit.pj.test

Class Test14 is a unit test main program for the all-reduce collective communication operation in class Comm.

Test15 - Class in edu.rit.pj.test

Class Test15 is a unit test main program for the all-gather collective communication operation in class Comm.

Test16 - Class in edu.rit.pj.test

Class Test16 is a unit test main program for the scan collective communication operation in class Comm.

Test17 - Class in edu.rit.pj.test

Class Test17 is a unit test main program for the exclusive-scan collective communication operation in class Comm.

Test18 - Class in edu.rit.pj.test

Class Test18 is a unit test main program for the all-to-all collective communication operation in class Comm.

Test19 - Class in edu.rit.pj.test

Class Test19 is a unit test main program for class Comm and class PJProperties.

Test20 - Class in edu.rit.pj.test

Class Test20 is a hybrid parallel unit test program for class ReplicatedInteger.

Test21 - Class in edu.rit.pj.test

Class Test21 is a unit test main program for classes WorkerTeam, WorkerRegion, and WorkerIntegerForLoop.

Test22 - Class in edu.rit.pj.test

Class Test22 is a unit test main program for classes WorkerTeam, WorkerRegion, and WorkerLongForLoop.

Test23 - Class in edu.rit.pj.test

Class Test23 is a unit test main program for classes HybridTeam, WorkerRegion, and WorkerIntegerForLoop.

Test24 - Class in edu.rit.pj.test

Class Test24 is a unit test main program for classes WorkerTeam, WorkerRegion, and WorkerIteration.

Test25 - Class in edu.rit.pj.test

Class Test25 is a unit test main program for classes HybridTeam, WorkerRegion, and WorkerIteration.

TestSchedule - Class in edu.rit.pj.test

Class TestSchedule provides a schedule object for testing class IntegerSchedule.

TestSchedule() - Constructor for class edu.rit.pj.test.TestSchedule

Construct a new test schedule object with an initial chunk size of 1 and a chunk size increment of 0.

TestSchedule(int, int) - Constructor for class edu.rit.pj.test.TestSchedule

Construct a new test schedule object with the given initial chunk size and chunk size increment.

TestSchedule(String[]) - Constructor for class edu.rit.pj.test.TestSchedule

Construct a new test schedule object.

TestSeq - Class in edu.rit.compbio.seq.test

Class TestSeq is a unit test main program for classes ProteinSequence and ProteinLocalAlignmentSeq.

TestSmp - Class in edu.rit.compbio.seq.test

Class TestSmp is a unit test main program for classes ProteinSequence and ProteinLocalAlignmentSmp.

Text - Class in edu.rit.draw.item

Class Text provides a textual DrawingItem.

Text() - Constructor for class edu.rit.draw.item.Text

Construct a new text item.

Text(Text) - Constructor for class edu.rit.draw.item.Text

Construct a new text item with the same text, location, and attributes as the given text item.

text() - Method in class edu.rit.draw.item.Text

Returns this text item's text.

text(String) - Method in class edu.rit.draw.item.Text

Set this text item's text.

Text.Alignment - Enum in edu.rit.draw.item

Enumeration Text.Alignment specifies the alignment of multiple lines in a Text item.

Ticks - Class in edu.rit.numeric.plot.impl

Class Ticks provides information about tick marks to be drawn on a NumericalAxis.

Ticks() - Constructor for class edu.rit.numeric.plot.impl.Ticks

Construct a new ticks information object.

Ticks(DecimalFormat) - Constructor for class edu.rit.numeric.plot.impl.Ticks

Construct a new ticks information object.

Ticks(DecimalFormat, double) - Constructor for class edu.rit.numeric.plot.impl.Ticks

Construct a new ticks information object.

Ticks(Stroke, Paint, double, DecimalFormat, double, Font, Paint, double) - Constructor for class edu.rit.numeric.plot.impl.Ticks

Construct a new ticks information object.

time() - Method in class edu.rit.sim.Event

Returns this event's simulation time, the time when this event is scheduled to take place.

time() - Method in class edu.rit.sim.Simulation

Returns the current simulation time.

TimeBcastByte - Class in edu.rit.clu.timing

Class TimeBcastByte measures the time to broadcast a message on a workstation cluster computer using Parallel Java (PJ).

TimeBcastDouble - Class in edu.rit.clu.timing

Class TimeBcastDouble measures the time to broadcast a message on a workstation cluster computer using Parallel Java (PJ).

TimeBcastInt - Class in edu.rit.clu.timing

Class TimeBcastInt measures the time to broadcast a message on a workstation cluster computer using Parallel Java (PJ).

TimeFit - Class in <Unnamed>

Class TimeFit is a main program that analyzes running time measurements and fits them to a running time model for a parallel program.

Timer - Class in edu.rit.util

Class Timer controls the execution of a TimerTask's timed actions.

TimerTask - Interface in edu.rit.util

Interface TimerTask specifies the interface for an object that performs timed actions under the control of a Timer.

TimerThread - Class in edu.rit.util

Class TimerThread encapsulates a thread that does the timing for Timers and performs TimerTasks' actions when timeouts occur.

TimerThread() - Constructor for class edu.rit.util.TimerThread

Construct a new timer thread.

TimeSendByte - Class in edu.rit.clu.timing

Class TimeSendByte measures the time to send a message on a workstation cluster computer using Parallel Java (PJ).

TimeSendDouble - Class in edu.rit.clu.timing

Class TimeSendDouble measures the time to send a message on a workstation cluster computer using Parallel Java (PJ).

TimeSendInt - Class in edu.rit.clu.timing

Class TimeSendInt measures the time to send a message on a workstation cluster computer using Parallel Java (PJ).

tissues(List<Double>, List<Double>) - Method in class edu.rit.mri.PixelTissues

Specify the tissues for this pixel.

TissuesDataSetReader - Class in edu.rit.mri

Class TissuesDataSetReader provides an object that reads a magnetic resonance image tissues data set from a file.

TissuesDataSetReader(File) - Constructor for class edu.rit.mri.TissuesDataSetReader

Construct a new tissues data set reader.

TissuesDataSetWriter - Class in edu.rit.mri

Class TissuesDataSetWriter provides an object that writes a magnetic resonance image tissues data set to a file.

TissuesDataSetWriter(File, int, int) - Constructor for class edu.rit.mri.TissuesDataSetWriter

Construct a new tissues data set writer.

to(double, double) - Method in class edu.rit.draw.item.Line

Add a line segment to this line.

to(Point) - Method in class edu.rit.draw.item.Line

Add a line segment to this line.

to(double, double) - Method in class edu.rit.draw.item.Polygon

Add a line segment to this polygon.

to(Point) - Method in class edu.rit.draw.item.Polygon

Add a line segment to this polygon.

toByte(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a byte value.

toByteArray() - Method in class edu.rit.util.ByteSequence

Obtain a byte array with a copy of this byte sequence's contents.

toByteArray(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a sequence of bytes stored in a new byte array.

toByteArray(String, byte[]) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a sequence of bytes stored in the given byte array.

toByteArray(String, byte[], int, int) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a sequence of bytes stored in a portion of the given byte array.

toChar(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a char value.

toInt(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to an int value.

tol - Variable in class edu.rit.numeric.MDMinimizationDownhillSimplex

Tolerance.

tol - Variable in class edu.rit.numeric.NonLinearLeastSquares

Tolerance.

toList() - Method in class edu.rit.compbio.phyl.DnaSequenceTree

Create a DnaSequenceList consisting of the DNA sequences associated with the tip nodes in this tree.

toLong(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a long value.

TooManyIterationsException - Exception in edu.rit.numeric

Class TooManyIterationsException is an unchecked runtime exception thrown if too many iterations have occurred when computing a function.

TooManyIterationsException() - Constructor for exception edu.rit.numeric.TooManyIterationsException

Construct a new too-many-iterations exception with no detail message and no cause.

TooManyIterationsException(String) - Constructor for exception edu.rit.numeric.TooManyIterationsException

Construct a new too-many-iterations exception with the given detail message and no cause.

TooManyIterationsException(Throwable) - Constructor for exception edu.rit.numeric.TooManyIterationsException

Construct a new too-many-iterations exception with the given cause and the default detail message.

TooManyIterationsException(String, Throwable) - Constructor for exception edu.rit.numeric.TooManyIterationsException

Construct a new too-many-iterations exception with the given detail message and the given cause.

topMargin(double) - Method in class edu.rit.numeric.plot.Plot

Set the top margin for the plot.

toShort(String) - Static method in class edu.rit.util.Hex

Convert the given hexadecimal string to a short value.

toString() - Method in class edu.rit.compbio.phyl.DnaSequence

Returns a string version of this DNA sequence.

toString() - Method in class edu.rit.compbio.phyl.DnaSequenceTree

Returns a string version of this DNA sequence tree.

toString() - Method in class edu.rit.compbio.seq.Alignment

Returns a string version of this alignment object.

toString() - Method in class edu.rit.compbio.seq.ProteinSequence

Returns a string version of this protein sequence.

toString() - Method in class edu.rit.draw.item.Point

Returns a string version of this point.

toString() - Method in class edu.rit.draw.item.Size

Returns a string version of this size.

toString() - Method in enum edu.rit.http.HttpResponse.Status

Returns a string version of this Status value.

toString() - Method in class edu.rit.mp.Channel

Returns a string version of this channel.

toString() - Method in class edu.rit.mp.IORequest

Returns a string version of this I/O request.

toString() - Method in class edu.rit.numeric.BigRational

Returns a string version of this rational number.

toString() - Method in class edu.rit.numeric.Rational

Returns a string version of this rational number.

toString() - Method in enum edu.rit.pj.cluster.BackendInfo.State

Returns a string version of this State value.

toString() - Method in enum edu.rit.pj.cluster.JobInfo.State

Returns a string version of this State value.

toString() - Method in enum edu.rit.pj.cluster.ProcessInfo.State

Returns a string version of this State value.

toString() - Method in class edu.rit.pj.Comm

Returns a string version of this communicator.

toString() - Method in class edu.rit.pj.io.StreamFile

Returns a string version of this stream file.

toString() - Method in class edu.rit.pj.reduction.SharedBoolean

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedBooleanArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedByte

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedByteArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedCharacter

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedCharacterArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedDouble

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedDoubleArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedFloat

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedFloatArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedInteger

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedIntegerArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedLong

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedLongArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedObject

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedObjectArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedShort

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.reduction.SharedShortArray

Returns a string version of this array reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedBoolean

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedByte

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedCharacter

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedDouble

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedFloat

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedInteger

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedLong

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedObject

Returns a string version of this reduction variable.

toString() - Method in class edu.rit.pj.replica.ReplicatedShort

Returns a string version of this reduction variable.

toString(byte) - Static method in class edu.rit.util.Hex

Convert the given byte value to a two-digit hexadecimal string.

toString(char) - Static method in class edu.rit.util.Hex

Convert the given char value to a four-digit hexadecimal string.

toString(short) - Static method in class edu.rit.util.Hex

Convert the given short value to a four-digit hexadecimal string.

toString(int) - Static method in class edu.rit.util.Hex

Convert the given int value to an eight-digit hexadecimal string.

toString(long) - Static method in class edu.rit.util.Hex

Convert the given long value to a sixteen-digit hexadecimal string.

toString(byte[]) - Static method in class edu.rit.util.Hex

Convert the given byte array to a hexadecimal string.

toString(byte[], int, int) - Static method in class edu.rit.util.Hex

Convert a portion of the given byte array to a hexadecimal string.

toString() - Method in class edu.rit.util.LongRange

Returns a string version of this range.

toString() - Method in class edu.rit.util.Range

Returns a string version of this range.

toString() - Method in class edu.rit.vector.Vector2D

Returns a string version of this vector.

totalCpus - Variable in class edu.rit.pj.cluster.BackendInfo

The total number of CPUs in the backend.

toTree(int[]) - Method in class edu.rit.compbio.phyl.DnaSequenceList

Create a DNA sequence tree from this DNA sequence list and the given tree signature.

Transcript - Class in edu.rit.swing

Class Transcript is a Java Swing component that displays plain text written to an output stream.

Transcript() - Constructor for class edu.rit.swing.Transcript

Construct a new transcript.

Transcript(Font) - Constructor for class edu.rit.swing.Transcript

Construct a new transcript that will use the given font.

Transcript(Font, int) - Constructor for class edu.rit.swing.Transcript

Construct a new transcript that will use the given font and that will display the given maximum number of lines.

Transcript(Font, int, int, int) - Constructor for class edu.rit.swing.Transcript

Construct a new transcript that will use the given font, that will display the given maximum number of lines, and that will have the given number of lines and columns visible.

TranscriptFrame - Class in edu.rit.swing

Class TranscriptFrame is a Java Swing frame (window) that displays plain text written to an output stream.

TranscriptFrame(String) - Constructor for class edu.rit.swing.TranscriptFrame

Construct a new transcript frame.

TranscriptFrame(String, Font) - Constructor for class edu.rit.swing.TranscriptFrame

Construct a new transcript frame that will use the given font.

TranscriptFrame(String, Font, int) - Constructor for class edu.rit.swing.TranscriptFrame

Construct a new transcript frame that will use the given font and that will display the given maximum number of lines.

TranscriptFrame(String, Font, int, int, int) - Constructor for class edu.rit.swing.TranscriptFrame

Construct a new transcript frame that will use the given font, that will display the given maximum number of lines, and that will have the given number of lines and columns visible.

transform(Point) - Method in class edu.rit.draw.item.Group

Transform the given point by applying this group's scaling, shearing, rotation, and translation transforms.

TransformedSeries - Class in edu.rit.numeric

Class TransformedSeries provides a Series that is formed by transforming the values in an underlying Series.

TransformedSeries(Series, Function) - Constructor for class edu.rit.numeric.TransformedSeries

Construct a new transformed series.

TransformedXYSeries - Class in edu.rit.numeric

Class TransformedXYSeries provides an XYSeries that is formed by transforming the values in an underlying XYSeries.

TransformedXYSeries(XYSeries, Function, Function) - Constructor for class edu.rit.numeric.TransformedXYSeries

Construct a new transformed X-Y series.

TransformedXYZSeries - Class in edu.rit.numeric

Class TransformedXYZSeries provides an XYZSeries that is formed by transforming the values in an underlying XYZSeries.

TransformedXYZSeries(XYZSeries, Function, Function, Function) - Constructor for class edu.rit.numeric.TransformedXYZSeries

Construct a new transformed X-Y-Z series.

TrapFrame - Class in edu.rit.clu.antimatter

Class TrapFrame is a UI window that displays the positions of antiprotons and the total momentum in the Antimatter Simulation.

TrapFrame(String, Vector2D[], double) - Constructor for class edu.rit.clu.antimatter.TrapFrame

Construct a new particle window.

TrapPanel - Class in edu.rit.clu.antimatter

Class TrapPanel is a UI that displays the positions of antiprotons in the Antimatter Simulation.

TrapPanel(Vector2D[], double) - Constructor for class edu.rit.clu.antimatter.TrapPanel

Construct a new particle panel.

tree(int) - Method in class edu.rit.compbio.phyl.MaximumParsimonyResults

Returns the tree at the given index in this maximum parsimony results object.

TreeDrawing - Class in edu.rit.compbio.phyl

Class TreeDrawing provides an object that draws a picture of a phylogenetic tree.

TreeDrawing() - Constructor for class edu.rit.compbio.phyl.TreeDrawing

Construct a new tree drawing object.

TreeDrawing.SyntaxException - Exception in edu.rit.compbio.phyl

Class TreeDrawing.SyntaxException is an exception thrown if there was a syntax error in a tree string.

Tridiagonal - Class in edu.rit.numeric

Class Tridiagonal provides static methods for solving tridiagonal systems of linear equations.

truncate(int) - Method in class edu.rit.compbio.phyl.DnaSequenceList

Truncate this DNA sequence list to the given length.

tTestUnequalVariance(Series, Series) - Static method in class edu.rit.numeric.Statistics

Do an unequal-variance t-test on the two given data series.