A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

P

pack() - Method in class edu.rit.color.HSB
Pack this floating point HSB color into a packed color.
pack(float, float, float) - Static method in class edu.rit.color.HSB
Pack the given hue, saturation, and brightness components into a packed color.
pack() - Method in class edu.rit.color.IntRGB
Pack this integer RGB color into a packed color.
pack(int, int, int) - Static method in class edu.rit.color.IntRGB
Pack the given red, green, and blue components into a packed color.
pack() - Method in class edu.rit.color.RGB
Pack this floating point RGB color into a packed color.
pack(float, float, float) - Static method in class edu.rit.color.RGB
Pack the given red, green, and blue components into a packed color.
Packing - Class in edu.rit.util
Class Packing provides static methods for packing and unpacking arrays of bytes into and out of integers, long integers, and arrays thereof.
packIntBigEndian(byte[], int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into an integer in big-endian order.
packIntBigEndian(byte[], int, int[], int, int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into the given array of integers in big-endian order.
packIntLittleEndian(byte[], int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into an integer in little-endian order.
packIntLittleEndian(byte[], int, int[], int, int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into the given array of integers in little-endian order.
packLongBigEndian(byte[], int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into a long integer in big-endian order.
packLongBigEndian(byte[], int, long[], int, int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into the given array of long integers in big-endian order.
packLongLittleEndian(byte[], int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into a long integer in little-endian order.
packLongLittleEndian(byte[], int, long[], int, int) - Static method in class edu.rit.util.Packing
Pack bytes from the given array into the given array of long integers in little-endian order.
paintComponent(Graphics) - Method in class edu.rit.clu.antimatter.TrapPanel
Paint this trap panel's display.
paintComponent(Graphics) - Method in class edu.rit.swing.DisplayablePanel
Paint this displayable panel into the given graphics context.
paintComponent(Graphics) - Method in class edu.rit.swing.ImagePanel
Paint this image panel in the given graphics context.
ParallelConstruct - Class in edu.rit.pj
Class ParallelConstruct is the common base class for all parallel constructs that are executed by a ParallelTeam.
ParallelConstruct() - Constructor for class edu.rit.pj.ParallelConstruct
Construct a new parallel construct.
ParallelForLoop - Class in edu.rit.pj
Class ParallelForLoop is the abstract base class for a parallel for loop that is executed inside a ParallelRegion.
ParallelForLoop() - Constructor for class edu.rit.pj.ParallelForLoop
Construct a new parallel for loop.
ParallelIteration<T> - Class in edu.rit.pj
Class ParallelIteration is the abstract base class for a parallel iteration that is executed inside a ParallelRegion.
ParallelIteration() - Constructor for class edu.rit.pj.ParallelIteration
Construct a new parallel iteration.
ParallelRegion - Class in edu.rit.pj
Class ParallelRegion is the abstract base class for a parallel region that is executed by a ParallelTeam of threads.
ParallelRegion() - Constructor for class edu.rit.pj.ParallelRegion
Construct a new parallel region.
ParallelSection - Class in edu.rit.pj
Class ParallelSection is the abstract base class for a section of code to be executed in parallel.
ParallelSection() - Constructor for class edu.rit.pj.ParallelSection
Construct a new parallel section.
ParallelTeam - Class in edu.rit.pj
Class ParallelTeam provides a team of threads for executing a ParallelRegion in parallel.
ParallelTeam() - Constructor for class edu.rit.pj.ParallelTeam
Construct a new parallel team with the default number of threads.
ParallelTeam(int) - Constructor for class edu.rit.pj.ParallelTeam
Construct a new parallel team with the given number of threads.
param - Variable in class edu.rit.numeric.RobustFit
The model parameters.
ParameterizedFunction - Interface in edu.rit.numeric
Interface ParameterizedFunction specifies the interface for a real-valued function of a real-valued argument, with additional parameters.
parameterLength() - Method in interface edu.rit.numeric.ParameterizedFunction
Returns the number of parameters, M.
paramSeries - Variable in class edu.rit.numeric.RobustFit
The model parameter distribution.
parent(int) - Method in class edu.rit.compbio.phyl.DnaSequenceTree
Returns the parent of the given node in this tree.
parse(String) - Static method in class edu.rit.pj.IntegerSchedule
Returns a schedule object of a type determined by parsing the given string.
parse(String) - Static method in class edu.rit.pj.LongSchedule
Returns a schedule object of a type determined by parsing the given string.
patchBuffer(boolean[][], Range, Range) - Static method in class edu.rit.mp.BooleanBuf
Create a buffer for one patch of the given Boolean matrix.
patchBuffer(byte[][], Range, Range) - Static method in class edu.rit.mp.ByteBuf
Create a buffer for one patch of the given byte matrix.
patchBuffer(char[][], Range, Range) - Static method in class edu.rit.mp.CharacterBuf
Create a buffer for one patch of the given character matrix.
patchBuffer(double[][], Range, Range) - Static method in class edu.rit.mp.DoubleBuf
Create a buffer for one patch of the given double matrix.
patchBuffer(float[][], Range, Range) - Static method in class edu.rit.mp.FloatBuf
Create a buffer for one patch of the given float matrix.
patchBuffer(int[][], Range, Range) - Static method in class edu.rit.mp.IntegerBuf
Create a buffer for one patch of the given integer matrix.
patchBuffer(long[][], Range, Range) - Static method in class edu.rit.mp.LongBuf
Create a buffer for one patch of the given long matrix.
patchBuffer(T[][], Range, Range) - Static method in class edu.rit.mp.ObjectBuf
Create a buffer for one patch of the given object matrix.
patchBuffer(short[][], Range, Range) - Static method in class edu.rit.mp.ShortBuf
Create a buffer for one patch of the given short matrix.
patchBuffer(int[][], Range, Range) - Static method in class edu.rit.mp.Signed16BitIntegerBuf
Create a buffer for one patch of the given integer matrix.
patchBuffer(int[][], Range, Range) - Static method in class edu.rit.mp.Signed8BitIntegerBuf
Create a buffer for one patch of the given integer matrix.
patchBuffer(int[][], Range, Range) - Static method in class edu.rit.mp.Unsigned16BitIntegerBuf
Create a buffer for one patch of the given integer matrix.
patchBuffer(int[][], Range, Range) - Static method in class edu.rit.mp.Unsigned8BitIntegerBuf
Create a buffer for one patch of the given integer matrix.
patchBuffers(boolean[][], Range[], Range[]) - Static method in class edu.rit.mp.BooleanBuf
Create an array of buffers for multiple patches of the given Boolean matrix.
patchBuffers(byte[][], Range[], Range[]) - Static method in class edu.rit.mp.ByteBuf
Create an array of buffers for multiple patches of the given byte matrix.
patchBuffers(char[][], Range[], Range[]) - Static method in class edu.rit.mp.CharacterBuf
Create an array of buffers for multiple patches of the given character matrix.
patchBuffers(double[][], Range[], Range[]) - Static method in class edu.rit.mp.DoubleBuf
Create an array of buffers for multiple patches of the given double matrix.
patchBuffers(float[][], Range[], Range[]) - Static method in class edu.rit.mp.FloatBuf
Create an array of buffers for multiple patches of the given float matrix.
patchBuffers(int[][], Range[], Range[]) - Static method in class edu.rit.mp.IntegerBuf
Create an array of buffers for multiple patches of the given integer matrix.
patchBuffers(long[][], Range[], Range[]) - Static method in class edu.rit.mp.LongBuf
Create an array of buffers for multiple patches of the given long matrix.
patchBuffers(T[][], Range[], Range[]) - Static method in class edu.rit.mp.ObjectBuf
Create an array of buffers for multiple patches of the given object matrix.
patchBuffers(short[][], Range[], Range[]) - Static method in class edu.rit.mp.ShortBuf
Create an array of buffers for multiple patches of the given short matrix.
patchBuffers(int[][], Range[], Range[]) - Static method in class edu.rit.mp.Signed16BitIntegerBuf
Create an array of buffers for multiple patches of the given integer matrix.
patchBuffers(int[][], Range[], Range[]) - Static method in class edu.rit.mp.Signed8BitIntegerBuf
Create an array of buffers for multiple patches of the given integer matrix.
patchBuffers(int[][], Range[], Range[]) - Static method in class edu.rit.mp.Unsigned16BitIntegerBuf
Create an array of buffers for multiple patches of the given integer matrix.
patchBuffers(int[][], Range[], Range[]) - Static method in class edu.rit.mp.Unsigned8BitIntegerBuf
Create an array of buffers for multiple patches of the given integer matrix.
pattern() - Method in class edu.rit.swing.DecimalFormatTextField
Get this decimal format text field's pattern.
pattern(DecimalFormat) - Method in class edu.rit.swing.DecimalFormatTextField
Set this decimal format text field's pattern.
perform() - Method in class edu.rit.sim.Event
Perform this event.
perimeterIntersection(Point) - Method in class edu.rit.draw.item.Ellipse
Returns the point of intersection between (1) this ellipse's perimeter and (2) the line passing through this ellipse's center and the given point.
perimeterIntersection(double, double) - Method in class edu.rit.draw.item.Ellipse
Returns the point of intersection between (1) this ellipse's perimeter and (2) the line passing through this ellipse's center and the given point.
phase(int) - Method in class edu.rit.numeric.SeriesComplex
Returns the phase of the given complex value in this series.
phase(int) - Method in class edu.rit.numeric.XYSeriesComplex
Returns the phase of the given complex y value in this complex XY series.
phaseSeries() - Method in class edu.rit.numeric.SeriesComplex
Returns a new series consisting of the phases of the complex values in this series.
phaseSeries() - Method in class edu.rit.numeric.XYSeriesComplex
Returns a new series consisting of the phases of the complex y values in this complex XY series.
phaseXYSeries() - Method in class edu.rit.numeric.XYSeriesComplex
Returns a new XY series consisting of the x values and the phases of the complex y values in this complex XY series.
PhylogenyParsBnbHyb - Class in edu.rit.compbio.phyl
Class PhylogenyParsBnbHyb is a hybrid parallel program for maximum parsimony phylogenetic tree construction using branch-and-bound search.
PhylogenyParsBnbSeq - Class in edu.rit.compbio.phyl
Class PhylogenyParsBnbSeq is a sequential program for maximum parsimony phylogenetic tree construction using branch-and-bound search.
PhylogenyParsBnbSmp - Class in edu.rit.compbio.phyl
Class PhylogenyParsBnbSmp is an SMP parallel program for maximum parsimony phylogenetic tree construction using branch-and-bound search.
PhylogenyParsExhSeq - Class in edu.rit.compbio.phyl
Class PhylogenyParsExhSeq is a sequential program for maximum parsimony phylogenetic tree construction using exhaustive search.
PiClu - Class in edu.rit.clu.monte
Class PiClu is a cluster parallel program that calculates an approximate value for π using a Monte Carlo technique.
PiClu2 - Class in edu.rit.clu.monte
Class PiClu2 is a cluster parallel program that calculates an approximate value for π using a Monte Carlo technique.
PiHyb - Class in edu.rit.hyb.monte
Class PiHyb is a hybrid SMP cluster parallel program that calculates an approximate value for π using a Monte Carlo technique.
PINK - Static variable in class edu.rit.draw.item.ColorFill
Color fill object for the color pink.
PiSeq - Class in edu.rit.clu.monte
Class PiSeq is a sequential program that calculates an approximate value for π using a Monte Carlo technique.
PiSeq - Class in edu.rit.hyb.monte
Class PiSeq is a sequential program that calculates an approximate value for π using a Monte Carlo technique.
PiSeq - Class in edu.rit.smp.monte
Class PiSeq is a sequential program that calculates an approximate value for π using a Monte Carlo technique.
PiSeq3 - Class in edu.rit.smp.monte
Class PiSeq3 is a sequential program that calculates an approximate value for π using a Monte Carlo technique.
PiSmp - Class in edu.rit.smp.monte
Class PiSmp is an SMP parallel program that calculates an approximate value for π using a Monte Carlo technique.
PiSmp2 - Class in edu.rit.smp.monte
Class PiSmp2 is an SMP parallel program that calculates an approximate value for π using a Monte Carlo technique.
PiSmp3 - Class in edu.rit.smp.monte
Class PiSmp3 is an SMP parallel program that calculates an approximate value for π using a Monte Carlo technique.
PIXEL_COORDINATES - Static variable in class edu.rit.numeric.plot.impl.Label
The label's location is specified in pixel coordinates relative to the lower left corner of the plot area, rather than in plot coordinates.
PIXEL_COORDINATES - Static variable in class edu.rit.numeric.plot.Plot
The label's location is specified in pixel coordinates relative to the lower left corner of the plot area, rather than in plot coordinates.
PixelAnalysis - Class in edu.rit.mri
Class PixelAnalysis provides a routine for doing a spin relaxometry analysis on one pixel of a magnetic resonance image.
PixelChunk - Class in edu.rit.mri
Class PixelChunk encapsulates a chunk of pixels on which to perform a spin relaxometry analysis.
PixelChunk() - Constructor for class edu.rit.mri.PixelChunk
Construct a new, uninitialized pixel chunk object.
PixelChunk(int, int, int) - Constructor for class edu.rit.mri.PixelChunk
Construct a new pixel chunk object.
pixelCount() - Method in class edu.rit.mri.PixelChunk
Get the number of pixels to analyze.
pixelIndex() - Method in class edu.rit.mri.PixelChunk
Get the pixel index of the first pixel to analyze.
pixelIndex() - Method in class edu.rit.mri.PixelSignal
Get the pixel index.
pixelIndex(int) - Method in class edu.rit.mri.PixelSignal
Specify the pixel index.
pixelIndex() - Method in class edu.rit.mri.PixelTissues
Get the pixel index.
pixelIndex(int) - Method in class edu.rit.mri.PixelTissues
Specify the pixel index.
PixelSchedule - Class in edu.rit.mri
Class PixelSchedule provides a load balancing schedule object used by class SpinRelaxometryClu for partitioning the pixels of the input spin signal data sets among the workers.
PixelSchedule(int, String[]) - Constructor for class edu.rit.mri.PixelSchedule
Construct a new pixel schedule object.
PixelSignal - Class in edu.rit.mri
Class PixelSignal encapsulates the measured spin signal on one pixel of a magnetic resonance image.
PixelSignal() - Constructor for class edu.rit.mri.PixelSignal
Construct a new, uninitialized pixel signal object.
PixelSignal(int, int, short[]) - Constructor for class edu.rit.mri.PixelSignal
Construct a new pixel signal object.
PixelSignal(int, int, Series) - Constructor for class edu.rit.mri.PixelSignal
Construct a new pixel signal object.
PixelTissues - Class in edu.rit.mri
Class PixelTissues encapsulates the results of a spin relaxometry analysis on one pixel of a magnetic resonance image.
PixelTissues() - Constructor for class edu.rit.mri.PixelTissues
Construct a new, uninitialized pixel tissues object.
PixelTissues(int, int, List<Double>, List<Double>) - Constructor for class edu.rit.mri.PixelTissues
Construct a new pixel tissues object.
PJ_PORT - Static variable in class edu.rit.pj.cluster.Constants
The default port number to which the Job Scheduler listens for connections from job frontend processes (20617).
PJ_VERSION - Static variable in class edu.rit.pj.Version
The Parallel Java Library version.
PJG - Class in <Unnamed>
Class PJG is a program that displays a Parallel Java Graphics (PJG) image file.
PJGColorImage - Class in edu.rit.image
Class PJGColorImage provides a color image that is read from or written to a file in Parallel Java Graphics (PJG) format; class PJGColorImage is best suited when the image has a small number of discrete colors.
PJGColorImage() - Constructor for class edu.rit.image.PJGColorImage
Construct a new PJG color image.
PJGColorImage(int, int, int[][]) - Constructor for class edu.rit.image.PJGColorImage
Construct a new PJG color image with the given height, width, and underlying matrix.
PJGGrayImage - Class in edu.rit.image
Class PJGGrayImage provides an 8-bit grayscale image that is read from or written to a file in Parallel Java Graphics (PJG) format.
PJGGrayImage() - Constructor for class edu.rit.image.PJGGrayImage
Construct a new PJG grayscale image.
PJGGrayImage(int, int, byte[][]) - Constructor for class edu.rit.image.PJGGrayImage
Construct a new PJG grayscale image with the given height, width, and underlying matrix.
PJGGrayImage.Interpretation - Enum in edu.rit.image
Enum Interpretation specifies how to interpret a numerical pixel value as a shade of gray in a grayscale image.
PJGHueImage - Class in edu.rit.image
Class PJGHueImage provides a color image that is read from or written to a file in Parallel Java Graphics (PJG) format; class PJGHueImage is best suited when the image has a continuous range of hues.
PJGHueImage() - Constructor for class edu.rit.image.PJGHueImage
Construct a new PJG hue image.
PJGHueImage(int, int, int[][]) - Constructor for class edu.rit.image.PJGHueImage
Construct a new PJG hue image with the given height, width, and underlying matrix.
PJGImage - Class in edu.rit.image
Class PJGImage is the abstract base class for an image that is read from or written to a file in Parallel Java Graphics (PJG) format.
PJGImage.Reader - Class in edu.rit.image
Class PJGImage.Reader is the abstract base class for an object with which to read a PJGImage from an input stream.
PJGImage.Writer - Class in edu.rit.image
Class PJGImage.Writer is the abstract base class for an object with which to write a PJGImage to an output stream.
PJGImageFileFormatException - Exception in edu.rit.image
Class PJGImageFileFormatException is an IOException thrown if a PJG image file's contents are not formatted correctly.
PJGImageFileFormatException() - Constructor for exception edu.rit.image.PJGImageFileFormatException
Construct a new PJG image file format exception with no detail message and no cause.
PJGImageFileFormatException(String) - Constructor for exception edu.rit.image.PJGImageFileFormatException
Construct a new PJG image file format exception with the given detail message and no cause.
PJGImageFileFormatException(Throwable) - Constructor for exception edu.rit.image.PJGImageFileFormatException
Construct a new PJG image file format exception with the given cause and the default detail message.
PJGImageFileFormatException(String, Throwable) - Constructor for exception edu.rit.image.PJGImageFileFormatException
Construct a new PJG image file format exception with the given detail message and the given cause.
PJProperties - Class in edu.rit.pj
Class PJProperties provides static methods for reading Java system properties that control the behavior of Parallel Java.
pjrun - Class in <Unnamed>
Class pjrun is a main program that runs a program, other than a Parallel Java (PJ) program, on a cluster parallel computer using the PJ job queue.
Plot - Class in edu.rit.numeric.plot
Class Plot is a class for creating and displaying a plot.
Plot() - Constructor for class edu.rit.numeric.plot.Plot
Construct a new plot.
Plot.AxisKind - Enum in edu.rit.numeric.plot
Enum Plot.AxisKind enumerates the possible kinds of axis on a Plot.
PlotData - Class in edu.rit.mri.test
Class PlotData is a main program that displays a plot of a spin signal data set.
PlotPixel - Class in edu.rit.mri
Class PlotPixel is a main program that displays the results of a spin relaxometry analysis of a magnetic resonance image.
PlotSeries - Class in edu.rit.numeric.plot.impl
Class PlotSeries is the abstract base class for a plot series for an XYPlot.
PlotSeries() - Constructor for class edu.rit.numeric.plot.impl.PlotSeries
Construct a new plot series.
PlotSeries(XYSeries, Dots, BasicStroke, Color, boolean) - Constructor for class edu.rit.numeric.plot.impl.PlotSeries
Construct a new plot series.
plotTitle(String) - Method in class edu.rit.numeric.plot.Plot
Set the title for the plot.
plotTitleFont(Font) - Method in class edu.rit.numeric.plot.Plot
Set the title font for the plot.
plotTitleOffset(double) - Method in class edu.rit.numeric.plot.Plot
Set the offset from the plot area to the title for the plot.
Point - Class in edu.rit.draw.item
Class Point provides an (x,y) point on a drawing.
Point() - Constructor for class edu.rit.draw.item.Point
Construct a new point at location (0,0).
Point(double, double) - Constructor for class edu.rit.draw.item.Point
Construct a new point at location (x,y).
Point(Point) - Constructor for class edu.rit.draw.item.Point
Construct a new point at the same location as the given point.
Polygon - Class in edu.rit.draw.item
Class Polygon provides a polygon DrawingItem whose boundary consists of one or more straight line segments.
Polygon() - Constructor for class edu.rit.draw.item.Polygon
Construct a new polygon.
Polygon(Polygon) - Constructor for class edu.rit.draw.item.Polygon
Construct a new polygon with the same points, outline, and fill paint as the given polygon.
POST_METHOD - Static variable in class edu.rit.http.HttpRequest
The POST method string, "POST".
prepareToRead(InputStream) - Method in class edu.rit.clu.antimatter.AntiprotonFile
Prepare to read this antiproton file from the given input stream.
prepareToRead(InputStream) - Method in class edu.rit.image.PJGColorImage
Prepare to read this image from the given input stream.
prepareToRead(InputStream) - Method in class edu.rit.image.PJGGrayImage
Prepare to read this image from the given input stream.
prepareToRead(InputStream) - Method in class edu.rit.image.PJGHueImage
Prepare to read this image from the given input stream.
prepareToRead(InputStream) - Method in class edu.rit.image.PJGImage
Prepare to read this image from the given input stream.
prepareToRead(InputStream) - Method in class edu.rit.io.DoubleMatrixFile
Prepare to read this matrix file from the given input stream.
prepareToWrite(OutputStream) - Method in class edu.rit.clu.antimatter.AntiprotonFile
Prepare to write this antiproton file to the given output stream.
prepareToWrite(OutputStream) - Method in class edu.rit.image.PJGColorImage
Prepare to write this image to the given output stream.
prepareToWrite(OutputStream) - Method in class edu.rit.image.PJGGrayImage
Prepare to write this image to the given output stream.
prepareToWrite(OutputStream) - Method in class edu.rit.image.PJGHueImage
Prepare to write this image to the given output stream.
prepareToWrite(OutputStream) - Method in class edu.rit.image.PJGImage
Prepare to write this image to the given output stream.
prepareToWrite(OutputStream) - Method in class edu.rit.io.DoubleMatrixFile
Prepare to write this matrix file to the given output stream.
prepend(DrawingItem) - Method in class edu.rit.draw.item.Group
Add the given drawing item to the beginning of this group's list of drawing items.
Prime32File - Class in edu.rit.hyb.prime
Class Prime32File is a sequential program that stores a list of 32-bit prime numbers in a file.
Prime32List - Class in edu.rit.hyb.prime
Class Prime32List encapsulates a list of 32-bit prime numbers.
Prime32List(File) - Constructor for class edu.rit.hyb.prime.Prime32List
Construct a new 32-bit prime list.
PrimeCountFunctionHyb - Class in edu.rit.hyb.prime
Class PrimeCountFunctionHyb is a hybrid parallel program that calculates the prime counting function π(x).
PrimeCountFunctionSeq - Class in edu.rit.hyb.prime
Class PrimeCountFunctionSeq is a sequential program that calculates the prime counting function π(x).
print(PrintStream) - Method in interface edu.rit.compbio.seq.AlignmentStats
Print information about this alignment statistics object on the given print stream.
print(PrintStream) - Method in class edu.rit.compbio.seq.DefaultAlignmentStats
Print information about this alignment statistics object on the given print stream.
print() - Method in class edu.rit.numeric.Series
Print this series on the standard output.
print(PrintStream) - Method in class edu.rit.numeric.Series
Print this series on the given print stream.
print(PrintWriter) - Method in class edu.rit.numeric.Series
Print this series on the given print writer.
print() - Method in class edu.rit.numeric.SeriesComplex
Print this complex series on the standard output.
print(PrintStream) - Method in class edu.rit.numeric.SeriesComplex
Print this complex series on the given print stream.
print(PrintWriter) - Method in class edu.rit.numeric.SeriesComplex
Print this complex series on the given print writer.
print() - Method in class edu.rit.numeric.XYSeries
Print this XY series on the standard output.
print(PrintStream) - Method in class edu.rit.numeric.XYSeries
Print this XY series on the given print stream.
print(PrintWriter) - Method in class edu.rit.numeric.XYSeries
Print this XY series on the given print writer.
print() - Method in class edu.rit.numeric.XYSeriesComplex
Print this complex XY series on the standard output.
print(PrintStream) - Method in class edu.rit.numeric.XYSeriesComplex
Print this complex XY series on the given print stream.
print(PrintWriter) - Method in class edu.rit.numeric.XYSeriesComplex
Print this complex XY series on the given print writer.
print() - Method in class edu.rit.numeric.XYZSeries
Print this XYZ series on the standard output.
print(PrintStream) - Method in class edu.rit.numeric.XYZSeries
Print this XYZ series on the given print stream.
print(PrintWriter) - Method in class edu.rit.numeric.XYZSeries
Print this XYZ series on the given print writer.
printDetails(Alignment, Sequence, Sequence) - Method in class edu.rit.compbio.seq.AlignmentPrinter
Print details of the given alignment.
printStackTrace(PrintStream) - Method in exception edu.rit.pj.MultipleParallelException
Print this throwable and its backtrace to the specified print stream.
printStackTrace(PrintWriter) - Method in exception edu.rit.pj.MultipleParallelException
Print this throwable and its backtrace to the specified print writer.
PrintStreamLogger - Class in edu.rit.util
Class PrintStreamLogger provides an object that logs messages to a print stream.
PrintStreamLogger() - Constructor for class edu.rit.util.PrintStreamLogger
Construct a new print stream logger that logs to System.err.
PrintStreamLogger(PrintStream) - Constructor for class edu.rit.util.PrintStreamLogger
Construct a new print stream logger that logs to the given print stream.
printSummary(Alignment, Sequence) - Method in class edu.rit.compbio.seq.AlignmentPrinter
Print a summary of the given alignment.
printSyntaxError(PrintStream) - Method in exception edu.rit.compbio.phyl.TreeDrawing.SyntaxException
Print a syntax error message on the given print stream.
process(HttpRequest, HttpResponse) - Method in class edu.rit.http.HttpServer
Process the given HTTP request.
ProcessInfo - Class in edu.rit.pj.cluster
Class ProcessInfo provides a record of information about one job backend process in the PJ cluster middleware.
ProcessInfo(ProcessInfo.State, String, int, JobBackendRef, InetSocketAddress, InetSocketAddress, InetSocketAddress, Timer, Timer, int) - Constructor for class edu.rit.pj.cluster.ProcessInfo
Construct a new job information record.
ProcessInfo.State - Enum in edu.rit.pj.cluster
The state of a job backend process.
PRODUCT - Static variable in class edu.rit.pj.reduction.ByteOp
The byte product binary operation.
PRODUCT - Static variable in class edu.rit.pj.reduction.DoubleOp
The double product binary operation.
PRODUCT - Static variable in class edu.rit.pj.reduction.FloatOp
The float product binary operation.
PRODUCT - Static variable in class edu.rit.pj.reduction.IntegerOp
The integer product binary operation.
PRODUCT - Static variable in class edu.rit.pj.reduction.LongOp
The long product binary operation.
PRODUCT - Static variable in class edu.rit.pj.reduction.ShortOp
The short product binary operation.
Program1Clu - Class in <Unnamed>
Class Program1Clu is the cluster parallel version of the first program illustrating parallel computing.
Program1Seq - Class in <Unnamed>
Class Program1Seq is the sequential version of the first program illustrating parallel computing.
Program1Smp - Class in <Unnamed>
Class Program1Smp is the SMP parallel version of the first program illustrating parallel computing.
ProteinDatabase - Class in edu.rit.compbio.seq
Class ProteinDatabase encapsulates a protein sequence database stored in a file.
ProteinDatabase(File, File) - Constructor for class edu.rit.compbio.seq.ProteinDatabase
Construct a new protein sequence database.
ProteinLocalAlignment - Class in edu.rit.compbio.seq
Class ProteinLocalAlignment is the abstract base class for an object that does local alignments of ProteinSequences.
ProteinLocalAlignment() - Constructor for class edu.rit.compbio.seq.ProteinLocalAlignment
Construct a new protein sequence local alignment object.
ProteinLocalAlignmentSeq - Class in edu.rit.compbio.seq
Class ProteinLocalAlignmentSeq provides an object that does local alignments of ProteinSequences.
ProteinLocalAlignmentSeq() - Constructor for class edu.rit.compbio.seq.ProteinLocalAlignmentSeq
Construct a new protein sequence local alignment object.
ProteinLocalAlignmentSmp - Class in edu.rit.compbio.seq
Class ProteinLocalAlignmentSmp provides an object that does local alignments of ProteinSequences.
ProteinLocalAlignmentSmp(ParallelTeam) - Constructor for class edu.rit.compbio.seq.ProteinLocalAlignmentSmp
Construct a new protein sequence local alignment object.
ProteinSequence - Class in edu.rit.compbio.seq
Class ProteinSequence encapsulates a protein sequence.
ProteinSequence(String, String) - Constructor for class edu.rit.compbio.seq.ProteinSequence
Construct a new protein sequence from the given string.
ProteinSequence(File) - Constructor for class edu.rit.compbio.seq.ProteinSequence
Construct a new protein sequence read from the given file.
Proxy - Class in edu.rit.pj.cluster
Class Proxy is the abstract base class for a proxy object for sending messages to a PJ process.
Proxy(ChannelGroup, Channel) - Constructor for class edu.rit.pj.cluster.Proxy
Construct a new proxy.
put(int, boolean) - Method in class edu.rit.mp.BooleanBuf
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.BooleanArrayBuf
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.BooleanArrayBuf_1
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.BooleanItemBuf
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.BooleanMatrixBuf
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.BooleanMatrixBuf_1
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.ByteArrayBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.ByteArrayBuf_1
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.ByteItemBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.ByteMatrixBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.ByteMatrixBuf_1
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.CharacterArrayBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.CharacterArrayBuf_1
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.CharacterItemBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.CharacterMatrixBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.CharacterMatrixBuf_1
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.DoubleArrayBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.DoubleArrayBuf_1
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.DoubleItemBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.DoubleMatrixBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.DoubleMatrixBuf_1
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.EmptyBooleanBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.EmptyByteBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.EmptyCharacterBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.EmptyDoubleBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.EmptyFloatBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.EmptyIntegerBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.EmptyLongBuf
Store the given item in this buffer.
put(int, Object) - Method in class edu.rit.mp.buf.EmptyObjectBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.EmptyShortBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.EmptySigned16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.EmptySigned8BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.EmptyUnsigned16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.EmptyUnsigned8BitIntegerBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.FloatArrayBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.FloatArrayBuf_1
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.FloatItemBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.FloatMatrixBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.FloatMatrixBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.IntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.IntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.IntegerItemBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.IntegerMatrixBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.IntegerMatrixBuf_1
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.LongArrayBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.LongArrayBuf_1
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.LongItemBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.LongMatrixBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.LongMatrixBuf_1
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.ObjectArrayBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.ObjectArrayBuf_1
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.ObjectItemBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.ObjectMatrixBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.ObjectMatrixBuf_1
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.SharedBooleanArrayBuf
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.SharedBooleanArrayBuf_1
Store the given item in this buffer.
put(int, boolean) - Method in class edu.rit.mp.buf.SharedBooleanBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.SharedByteArrayBuf
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.SharedByteArrayBuf_1
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.buf.SharedByteBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.SharedCharacterArrayBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.SharedCharacterArrayBuf_1
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.buf.SharedCharacterBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.SharedDoubleArrayBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.SharedDoubleArrayBuf_1
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.buf.SharedDoubleBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.SharedFloatArrayBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.SharedFloatArrayBuf_1
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.buf.SharedFloatBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedIntegerBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.SharedLongArrayBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.SharedLongArrayBuf_1
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.buf.SharedLongBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.SharedObjectArrayBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.SharedObjectArrayBuf_1
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.buf.SharedObjectBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.SharedShortArrayBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.SharedShortArrayBuf_1
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.SharedShortBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned16BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned16BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned8BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned8BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedSigned8BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned16BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned16BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned8BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned8BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.SharedUnsigned8BitIntegerBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.ShortArrayBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.ShortArrayBuf_1
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.ShortItemBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.ShortMatrixBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.buf.ShortMatrixBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed16BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed16BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed16BitIntegerItemBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed16BitIntegerMatrixBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed16BitIntegerMatrixBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed8BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed8BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed8BitIntegerItemBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed8BitIntegerMatrixBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Signed8BitIntegerMatrixBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned16BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned16BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned16BitIntegerItemBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned16BitIntegerMatrixBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned16BitIntegerMatrixBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned8BitIntegerArrayBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned8BitIntegerArrayBuf_1
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned8BitIntegerItemBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned8BitIntegerMatrixBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.buf.Unsigned8BitIntegerMatrixBuf_1
Store the given item in this buffer.
put(int, byte) - Method in class edu.rit.mp.ByteBuf
Store the given item in this buffer.
put(int, char) - Method in class edu.rit.mp.CharacterBuf
Store the given item in this buffer.
put(int, double) - Method in class edu.rit.mp.DoubleBuf
Store the given item in this buffer.
put(int, float) - Method in class edu.rit.mp.FloatBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.IntegerBuf
Store the given item in this buffer.
put(int, long) - Method in class edu.rit.mp.LongBuf
Store the given item in this buffer.
put(int, T) - Method in class edu.rit.mp.ObjectBuf
Store the given item in this buffer.
put(int, short) - Method in class edu.rit.mp.ShortBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.Signed16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.Signed8BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.test.Buf01
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.Unsigned16BitIntegerBuf
Store the given item in this buffer.
put(int, int) - Method in class edu.rit.mp.Unsigned8BitIntegerBuf
Store the given item in this buffer.
put(String, byte[]) - Method in class edu.rit.pj.cluster.ResourceCache
Store the given resource content under the given resource name in this resource cache.
pValue - Variable in class edu.rit.numeric.RobustFit
The goodness-of-fit p-value.

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Copyright © 2005-2012 by Alan Kaminsky. All rights reserved. Send comments to ark­@­cs.rit.edu.